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Identification of IL-21-induced STAT3 dependent genes in human B cells - GSE51587
Neutrophil and PBMC gene expression data from Job's Syndrome - GSE8507
The effect of a dexamethasone and a FK506 on the induction of chemokines in human mast cells - GSE15174
Expression data from IBS patients before and after treatment - GSE14842
GSE19182- part of superseries 19190
* RankLists issues - Gene expression patterns in PBMC associated with asthma exacerbation attack - GSE19301
Gene expression pattern of alveolar macrophages of allergic asthmatics in comparison with control subjects - GSE22528
Gene expression analysis related to olive pollen allergy - GSE37157
Comparison of two sets of microarray experiments to define allergic asthma expression pattern - GSE41649
Progressive activation of Th2/Th22 characterizes acute and chronic atopic dermatitis - GSE36842
Influence of olive pollen stimuli on the gene- expression profile in healthy controls and allergic patients - GSE54522
*Maybe remove - Human basophil expression profiles - GSE64639
*Needs to be merged - Transcriptome profiling of nasal polyp derived human IL17RB positive and negative T-helper cells - GSE70898
Upper airway gene expression is an effective surrogate biomarker for Th2-driven inflammation in the lower airway - GSE41861
*Needs to be merged - Transcriptome profiling of T-helper cells from normal nasal mucosa and matched peripheral blood - GSE70900
Illumina Bead expression array data from Human IgE+ and IgG+ B cell subsets - GSE99948
Effect of intradermal immunotherapy (IDIT) injections on gene expression profiles of activated T cells derived from skin biopsy explants - GSE72324
Leukotriene E4 is a full functional agonist for human cysteinyl leukotriene type 1 receptor - GSE75603
Transcriptional profiling of egg allergy and relationship to disease phenotype - GSE88796 - new ranklist failed
GSE19187_family
GSE19190_family: Will be replaced with GSE19187
* COD1: A Transcriptomic Reporter Assay Employing Neutrophils to Measure Immunogenic Activity of Septic Patients Plasma GSE49755 - Neutrophil
Leukotriene E4 is a full functional agonist for human cysteinyl leukotriene type 1 receptor - GSE75603 - Cell Comparison
Distinct epithelial gene expression phenotypes in childhood respiratory allergy - GSE19187 - Disease State
Distinct epithelial gene expression phenotypes in childhood respiratory allergy - GSE19190 - Stimulation
Identification of IL-21-induced STAT3 dependent genes in human B cells - GSE51587 - All Samples
Leukotriene E4 is a full functional agonist for human cysteinyl leukotriene type 1 receptor - GSE75603 - Stimulation
Neutrophil and PBMC gene expression data from Job's Syndrome - GSE8507 - Neutrophils
Neutrophil and PBMC gene expression data from Job's Syndrome - GSE8507 - PBMC
Identification of IL-21-induced STAT3 dependent genes in human B cells - GSE51587 - All Samples_1
Upper airway gene expression is an effective surrogate biomarker for Th2-driven inflammation in the lower airway - GSE41861 - All Samples
Upper airway gene expression is an effective surrogate biomarker for Th2-driven inflammation in the lower airway - GSE41861 - Brochial
Upper airway gene expression is an effective surrogate biomarker for Th2-driven inflammation in the lower airway - GSE41861 - Brochial_1
Upper airway gene expression is an effective surrogate biomarker for Th2-driven inflammation in the lower airway - GSE41861 - Brochial_2
Upper airway gene expression is an effective surrogate biomarker for Th2-driven inflammation in the lower airway - GSE41861 - Nasal
GSE19182_family2
Transcriptional profiling of egg allergy and relationship to disease phenotype - GSE88796
Neutrophil and PBMC gene expression data from Job's Syndrome - GSE8507-for Test - PBMC Needs fixing - All Samples
* MG: Healthy adult and sJIA blood stimulation with innate immune ligands- GSE103500
Transcriptome profiling of 1) nasal polyp-derived human IL17RB positive and negative T-helper cells and 2) T-helper cells from normal nasal mucosa and matched peripheral blood - GSE70898_70900
Upper airway gene expression is an effective surrogate biomarker for Th2-driven inflammation in the lower airway - GSE41861 - Brochial_3
The effect of a dexamethasone and a FK506 on the induction of chemokines in human mast cells - GSE15174new
Genome-wide expression profiling of B Lymphocytes reveals IL4R increase in allergic asthma - GSE52742
*Maybe remove - GSE64638_family
*Remove - Merged_Filtered_Data_64664_10558_6338_Data
Human basophil expression profiles - GSE64639 - Atopic vs Non-atopic
Novel mediators of eicosanoid and epithelial nitric oxide production in asthma - GSE13785
Genome-wide expression analysis demonstrates a dominant role of TLR4 for activation of human phagocytes by the alarmin MRP8 - GSE56681
Distinct epithelial gene expression phenotypes in childhood respiratory allergy - GSE19190 - Disease State
GSE41861_familyMG3
Gene Expression Patterns in Peripheral Blood Mononuclear Cells Associated with Asthma Exacerbation Attack - GSE19301
* MG: Maternal influences on the transmission of leukocyte gene expression profiles in population samples (mother and child) - GSE21342
Lack of allergy to timothy grass pollen is not a passive phenomenon but associated with allergen specific modulation of immune reactivity - GSE70050
Allergen-specific immunotherapy modulates the balance of circulating Tfh and Tfr cells - GSE87399
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Microarray Data:
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Preprocessing
Data
Statistical
Perform Quantile Normalization
TRUE
FALSE
Perform Flooring
TRUE
FALSE
Min Expression
Perform Log2
TRUE
FALSE
Perform PALO
TRUE
FALSE
PALX percent
Range Cut
Chip Selection:
Affymetrix: HG-U133A
Affymetrix: HG-U133B
Affymetrix: HG-U133_Plus_2
Illumina: Illumina Hu6 V2
Illumina: Hu6 V2 (Norm.)
Illumina: Hu6 V3
Illumina: Hu V3 Ref 8
Illumina: HT12 V3
Illumina: Hu6 v3 HT12
Illumina: Hu6 V3 (GEO - Raw)
Illumina: HT12 V4
Illumina: Hu8 V2
Illumina: Sentrix Hu-6 v2
Ensembl: RnaSeq1 Hu Ens Gene
Affymetrix: HG 1.0 ST (transcript)
ABI: ABI Human v2
Agilent: Agilent-014850 (feature)
Agilent: Agilent-014850 (probe)
Affymetrix: PrimeView
Affymetrix: Rhesus Macaque
Module Generation:
2
3
Signal pattern:
input type:
BeadStudio
Custom
Metric
zscore
fold
Metric threshold
Intensity Difference Threshold
Measure of center
mean
median
Multiple Testing Correction
TRUE
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False Discovery Rate
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1.70.7-stable-gxb1-release