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Clinical

Comparison of two sets of microarray experiments to define allergic asthma expression pattern - GSE41649

Purpose

This study aimed at demonstrating the relevance and validity of microarrays in the definition of allergic asthma expression pattern.

Hypothesis

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Experimental Design

4 healthy controls without history of allergy and asthma and 4 allergic asthmatic subjects according to the American Thoracic Society (ATS) criteria were selected

Experimental Variables

Allergy history

Controls

4 healthy controls without history of allergy

Methods

Biopsies evaluated as acceptable by the research assistant were taken from bronchi of the right lung using alligator forceps (Olympus FB-15C-1). Biopsies were obtained from the ubsegmental and segmental bronchial carinae of the lower (3 to 5 biopsies) and upper (1 to 2 biopsies) lobes, as well as the lobar carinae of the middle (2 biopsies) and upper (1 to 2 biopsies) lobes to provide adequate samples of the large airways (3rd to 5th bronchial generation).

Additional Information

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Microarray
Affymetrix HG-U133A
8 Samples Loaded: 8
Human (Homo sapiens)
Bronchial biopsies
Allergy
The samples were mechanically homogenized (Rotor/Stator homogenizer; PowerGen) and total RNA was extracted using the RNEasy kit (Qiagen) according to the manufacturer’s instructions.
Sample Set Spreadsheet
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Samples Preview
Sample ID tissue Disease Status
GSM1020960 bronchial biopsies Healthy
GSM1020961 bronchial biopsies Healthy
GSM1020962 bronchial biopsies Healthy
GSM1020963 bronchial biopsies Healthy
GSM1020964 bronchial biopsies Allergic Asthmatic
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File
GSE41649_v1.csv
Sample Set Spreadsheet
GSE41649_v1.csv
Sample Set Spreadsheet
Log2 Transformed
Raw Signal
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Sample ID Tissue Disease Status
GSM1020960
bronchial biopsies
Healthy
GSM1020961
bronchial biopsies
Healthy
GSM1020962
bronchial biopsies
Healthy
GSM1020963
bronchial biopsies
Healthy
GSM1020964
bronchial biopsies
Allergic Asthmatic
GSM1020965
bronchial biopsies
Allergic Asthmatic
GSM1020966
bronchial biopsies
Allergic Asthmatic
GSM1020967
bronchial biopsies
Allergic Asthmatic

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