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Clinical

Progressive activation of Th2/Th22 characterizes acute and chronic atopic dermatitis - GSE36842

Purpose

Atopic dermatitis (AD) is a common disease, with an increasing prevalence. The primary pathogenesis of the disease is still elusive, resulting in lack of specific treatments. It is known that Th2 predominate in acute AD, and a switch to Th1 is characteristic of chronic disease. The objective of the study is to identify factors that participate in the onset of lesions and maintenance of chronic lesions.

Hypothesis

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Experimental Design

Acute, chronic, and non-lesional skin samples were collected from ten patients with moderate-to-severe AD that met our inclusion criteria, under an institutional review board–approved protocol. The following criteria were employed to define acute AD and distinguish true acute from “acute on chronic” skin lesions: a) new lesions of <72 hours duration, as previously defined;14 b) lack of skin lichenification; c) lack of regenerative hyperplasia, as defined by epidermal thickness ?150? [hematoxylin and eosin (H&E)] and basal or confluent supra-basal Keratin 16 (K16) positivity. No systemic or topical treatments were allowed for ?4 weeks prior to biopsies. Biopsy specimens were frozen in optimal cutting temperature (OCT) for immunohistochemistry (IHC) and liquid nitrogen for RNA extraction.

Experimental Variables

Progression of skin lesions.

Controls

non-lesional skin biopsies from 10 atopic dermatitis patients.

Methods

Biopsy specimens were frozen in optimal cutting temperature (OCT) for immunohistochemistry (IHC) and liquid nitrogen for RNA extraction.

Additional Information

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Microarray
Affymetrix HG-U133_Plus_2
39 Samples Loaded: 39
Human (Homo sapiens)
Skin
Atopic dermatitis
None
Cells lysed in RLT with Beta-2-mercaptoethanol, RNA was extracted using RNeasy-Micro kit (QIAGEN, Valencia, CA).
Sample Set Spreadsheet
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Samples Preview
Sample ID Age !Sample_title group patient cycles
GSM902800 67 P110 - NL NL P110 1Amp
GSM902801 67 P110 - ALS ALS P110 1Amp
GSM902802 67 P110 - CLS CLS P110 1Amp
GSM902803 33 P111 - NL NL P111 1Amp
GSM902804 33 P111 - ALS ALS P111 1Amp
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Log2 Transformed
Raw Signal
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Samples Viewer / Editor

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Sample ID Age !Sample Title Group Patient Cycles Elevated ige Family history of atopy Filaggrin mutation Scorad Eosinophil count Kit
GSM902800
67
P110 - NL
NL
P110
1Amp
No
No
Negative
0
Normal
Nugen
GSM902801
67
P110 - ALS
ALS
P110
1Amp
No
No
Negative
54
Normal
Nugen
GSM902802
67
P110 - CLS
CLS
P110
1Amp
No
No
Negative
54
Normal
Nugen
GSM902803
33
P111 - NL
NL
P111
1Amp
No
No
Negative
0
Normal
Nugen
GSM902804
33
P111 - ALS
ALS
P111
1Amp
No
No
Negative
50
Normal
Nugen
GSM902805
33
P111 - CLS
CLS
P111
1Amp
No
No
Negative
50
Normal
Nugen
GSM902806
45
P112 - NL
NL
P112
1Amp
Yes
No
Negative
0
Normal
Nugen
GSM902807
45
P112 - ALS
ALS
P112
1Amp
Yes
No
Negative
63
Normal
Nugen
GSM902808
45
P112 - CLS
CLS
P112
1Amp
Yes
No
Negative
63
Normal
Nugen
GSM902809
52
P113 - NL
NL
P113
1Amp
Yes
No
Negative
0
Normal
Nugen
GSM902810
52
P113 - ALS
ALS
P113
1Amp
Yes
No
Negative
40
Normal
Nugen
GSM902811
52
P113 - CLS
CLS
P113
1Amp
Yes
No
Negative
40
Normal
Nugen
GSM902812
20
P114 - NL
NL
P114
1Amp
No
No
Negative
0
Normal
Nugen
GSM902813
20
P114 - ALS
ALS
P114
1Amp
No
No
Negative
49
Normal
Nugen
GSM902814
20
P114 - CLS
CLS
P114
1Amp
No
No
Negative
49
Normal
Nugen
GSM902815
33
P115 - NL
NL
P115
1Amp
Yes
Yes
Negative
0
Normal
Nugen
GSM902816
33
P115 - ALS
ALS
P115
1Amp
Yes
Yes
Negative
43
Normal
Nugen
GSM902817
33
P115 - CLS
CLS
P115
1Amp
Yes
Yes
Negative
43
Normal
Nugen
GSM902818
26
P116 - NL
NL
P116
1Amp
Yes
Yes
Negative
0
Normal
Nugen
GSM902819
26
P116 - ALS
ALS
P116
1Amp
Yes
Yes
Negative
59
Normal
Nugen
GSM902820
26
P116 - CLS
CLS
P116
1Amp
Yes
Yes
Negative
59
Normal
Nugen
GSM902821
41
P10 - ALS
ALS
P10
1Amp
Yes
No
Negative
62
Normal
Nugen
GSM902822
40
P10 - NL
NL
P10
1Amp
Yes
No
Negative
0
Normal
Ambion
GSM902823
40
P10 - CLS
CLS
P10
1Amp
Yes
No
Negative
37
Normal
Ambion
GSM902824
 
N-1 - Normal
Normal
N-1
1Amp
 
 
 
0
 
Ambion
GSM902825
 
N-2 - Normal
Normal
N-2
1Amp
 
 
 
0
 
Ambion
GSM902826
 
N-3 - Normal
Normal
N-3
1Amp
 
 
 
0
 
Ambion
GSM902827
 
N-4 - Normal
Normal
N-4
1Amp
 
 
 
0
 
Ambion
GSM902828
 
N-5 - Normal
Normal
N-5
1Amp
 
 
 
0
 
Ambion
GSM902829
 
N-6 - Normal
Normal
N-6
1Amp
 
 
 
0
 
Ambion
GSM902830
 
N-7 - Normal
Normal
N-7
1Amp
 
 
 
0
 
Ambion
GSM902831
 
N-8 - Normal
Normal
N-8
1Amp
 
 
 
0
 
Ambion
GSM902832
 
N-10 - Normal
Normal
N-10
2Amp
 
 
 
0
 
Ambion
GSM902833
 
N2-1 - Normal
Normal
N2-1
2Amp
 
 
 
0
 
Ambion
GSM902834
 
N2-2 - Normal
Normal
N2-2
2Amp
 
 
 
0
 
Ambion
GSM902835
 
N2-3 - Normal
Normal
N2-3
2Amp
 
 
 
0
 
Ambion
GSM902836
 
N2-4 - Normal
Normal
N2-4
2Amp
 
 
 
0
 
Ambion
GSM902837
 
N2-5 - Normal
Normal
N2-5
2Amp
 
 
 
0
 
Ambion
GSM902838
 
N2-6 - Normal
Normal
N2-6
2Amp
 
 
 
0
 
Ambion

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