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Clinical

Novel mediators of eicosanoid and epithelial nitric oxide production in asthma - GSE13785

Purpose

Exercise-induced bronchoconstriction (EIB) is a distinct syndrome that occurs in 30-50% of asthmatics and is characterized by high levels of pro-inflammatory eicosanoids. We identified genes differentially expressed in the airways of asthmatics with EIB relative to asthmatics without EIB.

Hypothesis

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Experimental Design

Subjects 18-59 years of age were recruited who had a physician diagnosis of asthma for = 1 year, and used only an inhaled beta2-agonist for asthma treatment. In accordance with a priori definitions, asthmatics with a methacholine PC20 = 4 mg/ml were identified with = 20% fall in FEV1 following exercise challenge (EIB+ group) and asthmatic controls without EIB were identified with = 5% fall in FEV1 following exercise challenge (EIB- group). Potential participants were excluded if baseline FEV1 was = 65% predicted, history of smoking cigarettes within the prior year or = 7 pack-year smoking, treated for acute asthma within the prior month, hospitalized for asthma within the prior 3 months, or history of life threatening asthma. Participants were excluded if they had used an inhaled or oral corticosteroid, leukotriene modifier, long-acting antihistamine, cromone, or long-acting beta2-agonist in the 30 days prior to the study. Comparisons were also made to non-asthmatic subjects with negative methacholine (PC20 > 8 mg/ml) and dry air exercise challenge tests (< 20% fall in FEV1 following exercise).

Experimental Variables

EIB and exercise

Controls

EIB negative subjects

Methods

Epithelial brushings and endobronchial biopsies were obtained from subjects with asthma and EIB defined by a methacholine PC20 = 4 mg/mL and = 15% fall in FEV1 following exercise challenge. Some epithelial brushings from asthmatics were placed in primary culture and used at passage 1 or 2 for in vitro experiments as detailed in the supplemental material.

Additional Information

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Microarray
Affymetrix HG-U133_Plus_2
22 Samples Loaded: 22
Human (Homo sapiens)
Sputum
Asthma
Total RNA was extracted using the RNeasy Mini protocol (Qiagen, Valencia, CA).
Sample Set Spreadsheet
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Samples Preview
Sample ID tissue group disease Sample Exercise
GSM346858 sputum negative_pre negative Subject6 pre
GSM346859 sputum negative_post negative Subject6 post
GSM346860 sputum positive_pre positive Subject7 pre
GSM346861 sputum positive_post positive Subject7 post
GSM346862 sputum negative_pre negative Subject8 pre
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File
GSE13785_ori.csv
Sample Set Spreadsheet
Log2 Transformed
Raw Signal
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All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID Tissue Group Disease Sample Exercise
GSM346858
sputum
negative_pre
negative
Subject6
pre
GSM346859
sputum
negative_post
negative
Subject6
post
GSM346860
sputum
positive_pre
positive
Subject7
pre
GSM346861
sputum
positive_post
positive
Subject7
post
GSM346862
sputum
negative_pre
negative
Subject8
pre
GSM346863
sputum
negative_post
negative
Subject8
post
GSM346864
sputum
positive_pre
positive
Subject9
pre
GSM346865
sputum
positive_post
positive
Subject9
post
GSM346866
sputum
positive_pre
positive
Subject10
pre
GSM346867
sputum
positive_post
positive
Subject10
post
GSM346868
sputum
negative_pre
negative
Subject11
pre
GSM346869
sputum
negative_post
negative
Subject11
post
GSM346988
sputum
positive_pre
positive
Subject1
pre
GSM346989
sputum
positive_post
positive
Subject1
post
GSM346990
sputum
positive_pre
positive
Subject2
pre
GSM346991
sputum
positive_post
positive
Subject2
post
GSM346992
sputum
positive_pre
positive
Subject3
pre
GSM346993
sputum
positive_post
positive
Subject3
post
GSM346994
sputum
negative_pre
negative
Subject4
pre
GSM346995
sputum
negative_post
negative
Subject4
post
GSM346996
sputum
negative_pre
negative
Subject5
pre
GSM346997
sputum
negative_post
negative
Subject5
post

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