Novel mediators of eicosanoid and epithelial nitric oxide production in asthma - GSE13785
Exercise-induced bronchoconstriction (EIB) is a distinct syndrome that occurs in 30-50% of asthmatics and is characterized by high levels of pro-inflammatory eicosanoids. We identified genes differentially expressed in the airways of asthmatics with EIB relative to asthmatics without EIB.
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Subjects 18-59 years of age were recruited who had a physician diagnosis of asthma for = 1 year, and used only an inhaled beta2-agonist for asthma treatment. In accordance with a priori definitions, asthmatics with a methacholine PC20 = 4 mg/ml were identified with = 20% fall in FEV1 following exercise challenge (EIB+ group) and asthmatic controls without EIB were identified with = 5% fall in FEV1 following exercise challenge (EIB- group). Potential participants were excluded if baseline FEV1 was = 65% predicted, history of smoking cigarettes within the prior year or = 7 pack-year smoking, treated for acute asthma within the prior month, hospitalized for asthma within the prior 3 months, or history of life threatening asthma. Participants were excluded if they had used an inhaled or oral corticosteroid, leukotriene modifier, long-acting antihistamine, cromone, or long-acting beta2-agonist in the 30 days prior to the study. Comparisons were also made to non-asthmatic subjects with negative methacholine (PC20 > 8 mg/ml) and dry air exercise challenge tests (< 20% fall in FEV1 following exercise).
EIB and exercise
EIB negative subjects
Epithelial brushings and endobronchial biopsies were obtained from subjects with asthma and EIB defined by a methacholine PC20 = 4 mg/mL and = 15% fall in FEV1 following exercise challenge. Some epithelial brushings from asthmatics were placed in primary culture and used at passage 1 or 2 for in vitro experiments as detailed in the supplemental material.
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Sample ID | tissue | group | disease | Sample | Exercise |
---|---|---|---|---|---|
GSM346858 | sputum | negative_pre | negative | Subject6 | pre |
GSM346859 | sputum | negative_post | negative | Subject6 | post |
GSM346860 | sputum | positive_pre | positive | Subject7 | pre |
GSM346861 | sputum | positive_post | positive | Subject7 | post |
GSM346862 | sputum | negative_pre | negative | Subject8 | pre |
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Sample ID | Tissue | Group | Disease | Sample | Exercise |
---|---|---|---|---|---|
GSM346858 | sputum |
negative_pre |
negative |
Subject6 |
pre |
GSM346859 | sputum |
negative_post |
negative |
Subject6 |
post |
GSM346860 | sputum |
positive_pre |
positive |
Subject7 |
pre |
GSM346861 | sputum |
positive_post |
positive |
Subject7 |
post |
GSM346862 | sputum |
negative_pre |
negative |
Subject8 |
pre |
GSM346863 | sputum |
negative_post |
negative |
Subject8 |
post |
GSM346864 | sputum |
positive_pre |
positive |
Subject9 |
pre |
GSM346865 | sputum |
positive_post |
positive |
Subject9 |
post |
GSM346866 | sputum |
positive_pre |
positive |
Subject10 |
pre |
GSM346867 | sputum |
positive_post |
positive |
Subject10 |
post |
GSM346868 | sputum |
negative_pre |
negative |
Subject11 |
pre |
GSM346869 | sputum |
negative_post |
negative |
Subject11 |
post |
GSM346988 | sputum |
positive_pre |
positive |
Subject1 |
pre |
GSM346989 | sputum |
positive_post |
positive |
Subject1 |
post |
GSM346990 | sputum |
positive_pre |
positive |
Subject2 |
pre |
GSM346991 | sputum |
positive_post |
positive |
Subject2 |
post |
GSM346992 | sputum |
positive_pre |
positive |
Subject3 |
pre |
GSM346993 | sputum |
positive_post |
positive |
Subject3 |
post |
GSM346994 | sputum |
negative_pre |
negative |
Subject4 |
pre |
GSM346995 | sputum |
negative_post |
negative |
Subject4 |
post |
GSM346996 | sputum |
negative_pre |
negative |
Subject5 |
pre |
GSM346997 | sputum |
negative_post |
negative |
Subject5 |
post |
Name | ||
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