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Profiling of human CD4+ T subsets identifies a Th2-specific non-coding RNA GATA3-AS1 - GSE43005

Purpose

Host defense against diverse pathogens involves the recruitment and differentiation of CD4+ T effector subsets including T helper 1 (Th1), Th2, Th17 and induced regulatory T (Treg) cells. This study aimed to characterize the mRNA and large intergenic non-coding RNA (lincRNA) expression differences between human primary CD4+ T effector subsets and identify potential subset-specific genes.

Hypothesis

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Experimental Design

Gene expression microarray analysis of flow-cytometry sorted human primary naïve CD4+ T cells, CD4+ T central memory cells, Th1, Th2, Th17 and Treg cells from buffy coat of four healthy controls Gene expression microarray analysis was performed using SurePrint G3 Human Gene Expression 8X60K microarray.

Experimental Variables

T cell types

Controls

4 Healthy controls

Methods

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Additional Information

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Microarray
Agilent SurePrint G3 Human GE Probe Name v1
24 Samples Loaded: 24
Human (Homo sapiens)
T cells
Healthy
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample_title tissue cell type
GSM1054773 S2-Naive T whole blood Naive T
GSM1054774 S2-Memory T whole blood CD4+ T central memory
GSM1054775 S2-Th1 whole blood Th1
GSM1054776 S2-Th2 whole blood Th2
GSM1054777 S2-Th17 whole blood Th17
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Sample ID !Sample Title Tissue Cell type
GSM1054773
S2-Naive T
whole blood
Naive T
GSM1054774
S2-Memory T
whole blood
CD4+ T central memory
GSM1054775
S2-Th1
whole blood
Th1
GSM1054776
S2-Th2
whole blood
Th2
GSM1054777
S2-Th17
whole blood
Th17
GSM1054778
S2-Treg
whole blood
Treg
GSM1054779
S1-Naive T
whole blood
Naive T
GSM1054780
S1-Memory T
whole blood
CD4+ T central memory
GSM1054781
S3-Naive T
whole blood
Naive T
GSM1054782
S3-Memory T
whole blood
CD4+ T central memory
GSM1054783
S3-Th1
whole blood
Th1
GSM1054784
S3-Th2
whole blood
Th2
GSM1054785
S3-Th17
whole blood
Th17
GSM1054786
S3-Treg
whole blood
Treg
GSM1054787
S1-Th1
whole blood
Th1
GSM1054788
S1-Th2
whole blood
Th2
GSM1054789
S4-Naive T
whole blood
Naive T
GSM1054790
S4-Memory T
whole blood
CD4+ T central memory
GSM1054791
S4-Th1
whole blood
Th1
GSM1054792
S4-Th2
whole blood
Th2
GSM1054793
S4-Th17
whole blood
Th17
GSM1054794
S4-Treg
whole blood
Treg
GSM1054795
S1-Th17
whole blood
Th17
GSM1054796
S1-Treg
whole blood
Treg

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