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Maternal influences on the transmission of leukocyte gene expression profiles in population samples (mother and child) - GSE21342

Purpose

This study contrasts the expression profiles of peripheral blood leukocytes from third trimester pregnant mothers, with cord blood leukocytes from their newborn children. It is a companion to (GSE21311).

Hypothesis

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Experimental Design

56 individulas (Brisbane, Australia) were sampled for the mother-newborn study, under informed consent. 19 mothers sample were collected in the last month of pregnancy (between 30th and 36th week of pregnancy) and 37 cord blood samples were obtained at birth from newborn babies. Mothers having BMI values over 30 before pregnancy were classified as obese. From the 37 newborn babies, 10 were born to obese mothers, 8 to gestational diabetic mothers (with a wide range of body mass indices), and 19 to normal-weight mothers. There were 16 mother-newborn pairs in the dataset. RNA from each was hybridized to an Illumina HT12 array.

Experimental Variables

After normalization for RNA integrity, major principal components of the variation were found to distinguish individuals. Transmission of gene expression profiles from mother to child was documented, along with differences between gestational diabetic, obese, and normal weight mothers and their children.

Controls

19 to normal-weight mothers. There were 16 mother-newborn pairs in the dataset

Methods

RNA from each was hybridized to an Illumina HT12 array.

Additional Information

Raw data was log2 transformed and median-centered using JMP Genomics 4.0 (SAS Institute, Cary NC).

Microarray
Illumina HumanHT-12 v3
56 Samples Loaded: 56
Human (Homo sapiens)
PBL
Obesity
Total RNA was extracted from leukocyte samples using Ambion's Leukolocks kit. Quality control was performed using Agilent's Bioanalyzer.
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title tissue group Cell type Life stage
GSM533312 Cord blood leukocyte_Child of gestational mother_Sample 1 umbilical cord blood Cord Diabetic leukocytes newborn baby
GSM533313 Cord blood leukocyte_Child of gestational mother_Sample 2 umbilical cord blood Cord Diabetic leukocytes newborn baby
GSM533314 Cord blood leukocyte_Child of gestational mother_Sample 3 umbilical cord blood Cord Diabetic leukocytes newborn baby
GSM533315 Cord blood leukocyte_Child of gestational mother_Sample 4 umbilical cord blood Cord Diabetic leukocytes newborn baby
GSM533316 Cord blood leukocyte_Child of gestational mother_Sample 5 umbilical cord blood Cord Diabetic leukocytes newborn baby
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File
sampleset4000095_sampleannotations V1.csv
Sample Set Spreadsheet
sampleset4000095_sampleannotations V1.csv
Sample Set Spreadsheet
Log2 Transformed
Raw Signal
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Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID !Sample Title Tissue Group Cell type Life stage Rna integrity score
GSM533312
Cord blood leukocyte_Child of gestational mother_Sample 1
umbilical cord blood
Cord Diabetic
leukocytes
newborn baby
8.4
GSM533313
Cord blood leukocyte_Child of gestational mother_Sample 2
umbilical cord blood
Cord Diabetic
leukocytes
newborn baby
7.6
GSM533314
Cord blood leukocyte_Child of gestational mother_Sample 3
umbilical cord blood
Cord Diabetic
leukocytes
newborn baby
6.9
GSM533315
Cord blood leukocyte_Child of gestational mother_Sample 4
umbilical cord blood
Cord Diabetic
leukocytes
newborn baby
3.8
GSM533316
Cord blood leukocyte_Child of gestational mother_Sample 5
umbilical cord blood
Cord Diabetic
leukocytes
newborn baby
4.3
GSM533317
Cord blood leukocyte_Child of gestational mother_Sample 6
umbilical cord blood
Cord Diabetic
leukocytes
newborn baby
4.6
GSM533318
Cord blood leukocyte_Child of gestational mother_Sample 7
umbilical cord blood
Cord Diabetic
leukocytes
newborn baby
5.4
GSM533319
Cord blood leukocyte_Child of gestational mother_Sample 8
umbilical cord blood
Cord Diabetic
leukocytes
newborn baby
6.2
GSM533320
Cord blood leukocyte_Child of normal mother_Sample 1
umbilical cord blood
Cord normal
leukocytes
newborn baby
6.8
GSM533321
Cord blood leukocyte_Child of normal mother_Sample 2
umbilical cord blood
Cord normal
leukocytes
newborn baby
6.4
GSM533322
Cord blood leukocyte_Child of normal mother_Sample 3
umbilical cord blood
Cord normal
leukocytes
newborn baby
7.5
GSM533323
Cord blood leukocyte_Child of normal mother_Sample 4
umbilical cord blood
Cord normal
leukocytes
newborn baby
6.9
GSM533324
Cord blood leukocyte_Child of normal mother_Sample 5
umbilical cord blood
Cord normal
leukocytes
newborn baby
7.4
GSM533325
Cord blood leukocyte_Child of normal mother_Sample 6
umbilical cord blood
Cord normal
leukocytes
newborn baby
7.6
GSM533326
Cord blood leukocyte_Child of normal mother_Sample 7
umbilical cord blood
Cord normal
leukocytes
newborn baby
6.9
GSM533327
Cord blood leukocyte_Child of normal mother_Sample 8
umbilical cord blood
Cord normal
leukocytes
newborn baby
6.1
GSM533328
Cord blood leukocyte_Child of normal mother_Sample 9
umbilical cord blood
Cord normal
leukocytes
newborn baby
7.7
GSM533329
Cord blood leukocyte_Child of normal mother_Sample 10
umbilical cord blood
Cord normal
leukocytes
newborn baby
8.1
GSM533330
Cord blood leukocyte_Child of normal mother_Sample 11
umbilical cord blood
Cord normal
leukocytes
newborn baby
7.7
GSM533331
Cord blood leukocyte_Child of normal mother_Sample 12
umbilical cord blood
Cord normal
leukocytes
newborn baby
3.3
GSM533332
Cord blood leukocyte_Child of normal mother_Sample 13
umbilical cord blood
Cord normal
leukocytes
newborn baby
3.4
GSM533333
Cord blood leukocyte_Child of normal mother_Sample 14
umbilical cord blood
Cord normal
leukocytes
newborn baby
4.6
GSM533334
Cord blood leukocyte_Child of normal mother_Sample 15
umbilical cord blood
Cord normal
leukocytes
newborn baby
5.1
GSM533335
Cord blood leukocyte_Child of normal mother_Sample 16
umbilical cord blood
Cord normal
leukocytes
newborn baby
5.4
GSM533336
Cord blood leukocyte_Child of normal mother_Sample 17
umbilical cord blood
Cord normal
leukocytes
newborn baby
5.5
GSM533337
Cord blood leukocyte_Child of normal mother_Sample 18
umbilical cord blood
Cord normal
leukocytes
newborn baby
5.8
GSM533338
Cord blood leukocyte_Child of normal mother_Sample 19
umbilical cord blood
Cord normal
leukocytes
newborn baby
6.7
GSM533339
Cord blood leukocyte_Child of obese mother, Sample 3
umbilical cord blood
Cord obese
leukocytes
newborn baby
8.2
GSM533340
Cord blood leukocyte_Child of obese mother, Sample 4
umbilical cord blood
Cord obese
leukocytes
newborn baby
9.3
GSM533341
Cord blood leukocyte_Child of obese mother, Sample 5
umbilical cord blood
Cord obese
leukocytes
newborn baby
8.9
GSM533342
Cord blood leukocyte_Child of obese mother, Sample 6
umbilical cord blood
Cord obese
leukocytes
newborn baby
7.1
GSM533343
Cord blood leukocyte_Child of obese mother, Sample 8
umbilical cord blood
Cord obese
leukocytes
newborn baby
3.2
GSM533344
Cord blood leukocyte_Child of obese mother, Sample 9
umbilical cord blood
Cord obese
leukocytes
newborn baby
4.1
GSM533345
Cord blood leukocyte_Child of obese mother, Sample 10
umbilical cord blood
Cord obese
leukocytes
newborn baby
4.3
GSM533346
Cord blood leukocyte_Child of obese mother, Sample 11
umbilical cord blood
Cord obese
leukocytes
newborn baby
5.7
GSM533347
Cord blood leukocyte_Child of obese mother, Sample 12
umbilical cord blood
Cord obese
leukocytes
newborn baby
6
GSM533348
Cord blood leukocyte_Child of obese mother, Sample 13
umbilical cord blood
Cord obese
leukocytes
newborn baby
7.6
GSM533349
Peripheral blood leukocyte_Gestational diabetic mother_Sample 1
peripheral blood
Mom diabetic
leukocytes
mother
5.8
GSM533350
Peripheral blood leukocyte_Gestational diabetic mother_Sample 2
peripheral blood
Mom diabetic
leukocytes
mother
6.1
GSM533351
Peripheral blood leukocyte_Normal wieght mother_Sample 1
peripheral blood
Mom normal
leukocytes
mother
8
GSM533352
Peripheral blood leukocyte_Normal wieght mother_Sample 2
peripheral blood
Mom normal
leukocytes
mother
8.4
GSM533353
Peripheral blood leukocyte_Normal wieght mother_Sample 3
peripheral blood
Mom normal
leukocytes
mother
7.4
GSM533354
Peripheral blood leukocyte_Normal wieght mother_Sample 4
peripheral blood
Mom normal
leukocytes
mother
6.2
GSM533355
Peripheral blood leukocyte_Normal wieght mother_Sample 5
peripheral blood
Mom normal
leukocytes
mother
7.9
GSM533356
Peripheral blood leukocyte_Normal wieght mother_Sample 6
peripheral blood
Mom normal
leukocytes
mother
8.7
GSM533357
Peripheral blood leukocyte_Normal wieght mother_Sample 7
peripheral blood
Mom normal
leukocytes
mother
6.3
GSM533358
Peripheral blood leukocyte_Normal wieght mother_Sample 8
peripheral blood
Mom normal
leukocytes
mother
4.7
GSM533359
Peripheral blood leukocyte_Normal wieght mother_Sample 9
peripheral blood
Mom normal
leukocytes
mother
5.2
GSM533360
Peripheral blood leukocyte_Normal wieght mother_Sample 10
peripheral blood
Mom normal
leukocytes
mother
5.4
GSM533361
Peripheral blood leukocyte_Normal wieght mother_Sample 11
peripheral blood
Mom normal
leukocytes
mother
7.5
GSM533362
Peripheral blood leukocyte_Obese mother_Sample 1
peripheral blood
Mom obese
leukocytes
mother
9
GSM533363
Peripheral blood leukocyte_Obese mother_Sample 2
peripheral blood
Mom obese
leukocytes
mother
7.6
GSM533364
Peripheral blood leukocyte_Obese mother_Sample 3
peripheral blood
Mom obese
leukocytes
mother
4.9
GSM533365
Peripheral blood leukocyte_Obese mother_Sample 4
peripheral blood
Mom obese
leukocytes
mother
7.7
GSM533366
Peripheral blood leukocyte_Obese mother_Sample 5
peripheral blood
Mom obese
leukocytes
mother
7.8
GSM533367
Peripheral blood leukocyte_Obese mother_Sample 6
peripheral blood
Mom obese
leukocytes
mother
8.5

Group Sets View in Gene Expression Browser

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