Maternal influences on the transmission of leukocyte gene expression profiles in population samples (mother and child) - GSE21342
This study contrasts the expression profiles of peripheral blood leukocytes from third trimester pregnant mothers, with cord blood leukocytes from their newborn children. It is a companion to (GSE21311).
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56 individulas (Brisbane, Australia) were sampled for the mother-newborn study, under informed consent. 19 mothers sample were collected in the last month of pregnancy (between 30th and 36th week of pregnancy) and 37 cord blood samples were obtained at birth from newborn babies. Mothers having BMI values over 30 before pregnancy were classified as obese. From the 37 newborn babies, 10 were born to obese mothers, 8 to gestational diabetic mothers (with a wide range of body mass indices), and 19 to normal-weight mothers. There were 16 mother-newborn pairs in the dataset. RNA from each was hybridized to an Illumina HT12 array.
After normalization for RNA integrity, major principal components of the variation were found to distinguish individuals. Transmission of gene expression profiles from mother to child was documented, along with differences between gestational diabetic, obese, and normal weight mothers and their children.
19 to normal-weight mothers. There were 16 mother-newborn pairs in the dataset
RNA from each was hybridized to an Illumina HT12 array.
Raw data was log2 transformed and median-centered using JMP Genomics 4.0 (SAS Institute, Cary NC).
Sample ID | !Sample Title | tissue | group | Cell type | Life stage |
---|---|---|---|---|---|
GSM533312 | Cord blood leukocyte_Child of gestational mother_Sample 1 | umbilical cord blood | Cord Diabetic | leukocytes | newborn baby |
GSM533313 | Cord blood leukocyte_Child of gestational mother_Sample 2 | umbilical cord blood | Cord Diabetic | leukocytes | newborn baby |
GSM533314 | Cord blood leukocyte_Child of gestational mother_Sample 3 | umbilical cord blood | Cord Diabetic | leukocytes | newborn baby |
GSM533315 | Cord blood leukocyte_Child of gestational mother_Sample 4 | umbilical cord blood | Cord Diabetic | leukocytes | newborn baby |
GSM533316 | Cord blood leukocyte_Child of gestational mother_Sample 5 | umbilical cord blood | Cord Diabetic | leukocytes | newborn baby |
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Sample ID | !Sample Title | Tissue | Group | Cell type | Life stage | Rna integrity score |
---|---|---|---|---|---|---|
GSM533312 | Cord blood leukocyte_Child of gestational mother_Sample 1 |
umbilical cord blood |
Cord Diabetic |
leukocytes |
newborn baby |
8.4 |
GSM533313 | Cord blood leukocyte_Child of gestational mother_Sample 2 |
umbilical cord blood |
Cord Diabetic |
leukocytes |
newborn baby |
7.6 |
GSM533314 | Cord blood leukocyte_Child of gestational mother_Sample 3 |
umbilical cord blood |
Cord Diabetic |
leukocytes |
newborn baby |
6.9 |
GSM533315 | Cord blood leukocyte_Child of gestational mother_Sample 4 |
umbilical cord blood |
Cord Diabetic |
leukocytes |
newborn baby |
3.8 |
GSM533316 | Cord blood leukocyte_Child of gestational mother_Sample 5 |
umbilical cord blood |
Cord Diabetic |
leukocytes |
newborn baby |
4.3 |
GSM533317 | Cord blood leukocyte_Child of gestational mother_Sample 6 |
umbilical cord blood |
Cord Diabetic |
leukocytes |
newborn baby |
4.6 |
GSM533318 | Cord blood leukocyte_Child of gestational mother_Sample 7 |
umbilical cord blood |
Cord Diabetic |
leukocytes |
newborn baby |
5.4 |
GSM533319 | Cord blood leukocyte_Child of gestational mother_Sample 8 |
umbilical cord blood |
Cord Diabetic |
leukocytes |
newborn baby |
6.2 |
GSM533320 | Cord blood leukocyte_Child of normal mother_Sample 1 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
6.8 |
GSM533321 | Cord blood leukocyte_Child of normal mother_Sample 2 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
6.4 |
GSM533322 | Cord blood leukocyte_Child of normal mother_Sample 3 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
7.5 |
GSM533323 | Cord blood leukocyte_Child of normal mother_Sample 4 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
6.9 |
GSM533324 | Cord blood leukocyte_Child of normal mother_Sample 5 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
7.4 |
GSM533325 | Cord blood leukocyte_Child of normal mother_Sample 6 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
7.6 |
GSM533326 | Cord blood leukocyte_Child of normal mother_Sample 7 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
6.9 |
GSM533327 | Cord blood leukocyte_Child of normal mother_Sample 8 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
6.1 |
GSM533328 | Cord blood leukocyte_Child of normal mother_Sample 9 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
7.7 |
GSM533329 | Cord blood leukocyte_Child of normal mother_Sample 10 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
8.1 |
GSM533330 | Cord blood leukocyte_Child of normal mother_Sample 11 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
7.7 |
GSM533331 | Cord blood leukocyte_Child of normal mother_Sample 12 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
3.3 |
GSM533332 | Cord blood leukocyte_Child of normal mother_Sample 13 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
3.4 |
GSM533333 | Cord blood leukocyte_Child of normal mother_Sample 14 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
4.6 |
GSM533334 | Cord blood leukocyte_Child of normal mother_Sample 15 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
5.1 |
GSM533335 | Cord blood leukocyte_Child of normal mother_Sample 16 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
5.4 |
GSM533336 | Cord blood leukocyte_Child of normal mother_Sample 17 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
5.5 |
GSM533337 | Cord blood leukocyte_Child of normal mother_Sample 18 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
5.8 |
GSM533338 | Cord blood leukocyte_Child of normal mother_Sample 19 |
umbilical cord blood |
Cord normal |
leukocytes |
newborn baby |
6.7 |
GSM533339 | Cord blood leukocyte_Child of obese mother, Sample 3 |
umbilical cord blood |
Cord obese |
leukocytes |
newborn baby |
8.2 |
GSM533340 | Cord blood leukocyte_Child of obese mother, Sample 4 |
umbilical cord blood |
Cord obese |
leukocytes |
newborn baby |
9.3 |
GSM533341 | Cord blood leukocyte_Child of obese mother, Sample 5 |
umbilical cord blood |
Cord obese |
leukocytes |
newborn baby |
8.9 |
GSM533342 | Cord blood leukocyte_Child of obese mother, Sample 6 |
umbilical cord blood |
Cord obese |
leukocytes |
newborn baby |
7.1 |
GSM533343 | Cord blood leukocyte_Child of obese mother, Sample 8 |
umbilical cord blood |
Cord obese |
leukocytes |
newborn baby |
3.2 |
GSM533344 | Cord blood leukocyte_Child of obese mother, Sample 9 |
umbilical cord blood |
Cord obese |
leukocytes |
newborn baby |
4.1 |
GSM533345 | Cord blood leukocyte_Child of obese mother, Sample 10 |
umbilical cord blood |
Cord obese |
leukocytes |
newborn baby |
4.3 |
GSM533346 | Cord blood leukocyte_Child of obese mother, Sample 11 |
umbilical cord blood |
Cord obese |
leukocytes |
newborn baby |
5.7 |
GSM533347 | Cord blood leukocyte_Child of obese mother, Sample 12 |
umbilical cord blood |
Cord obese |
leukocytes |
newborn baby |
6 |
GSM533348 | Cord blood leukocyte_Child of obese mother, Sample 13 |
umbilical cord blood |
Cord obese |
leukocytes |
newborn baby |
7.6 |
GSM533349 | Peripheral blood leukocyte_Gestational diabetic mother_Sample 1 |
peripheral blood |
Mom diabetic |
leukocytes |
mother |
5.8 |
GSM533350 | Peripheral blood leukocyte_Gestational diabetic mother_Sample 2 |
peripheral blood |
Mom diabetic |
leukocytes |
mother |
6.1 |
GSM533351 | Peripheral blood leukocyte_Normal wieght mother_Sample 1 |
peripheral blood |
Mom normal |
leukocytes |
mother |
8 |
GSM533352 | Peripheral blood leukocyte_Normal wieght mother_Sample 2 |
peripheral blood |
Mom normal |
leukocytes |
mother |
8.4 |
GSM533353 | Peripheral blood leukocyte_Normal wieght mother_Sample 3 |
peripheral blood |
Mom normal |
leukocytes |
mother |
7.4 |
GSM533354 | Peripheral blood leukocyte_Normal wieght mother_Sample 4 |
peripheral blood |
Mom normal |
leukocytes |
mother |
6.2 |
GSM533355 | Peripheral blood leukocyte_Normal wieght mother_Sample 5 |
peripheral blood |
Mom normal |
leukocytes |
mother |
7.9 |
GSM533356 | Peripheral blood leukocyte_Normal wieght mother_Sample 6 |
peripheral blood |
Mom normal |
leukocytes |
mother |
8.7 |
GSM533357 | Peripheral blood leukocyte_Normal wieght mother_Sample 7 |
peripheral blood |
Mom normal |
leukocytes |
mother |
6.3 |
GSM533358 | Peripheral blood leukocyte_Normal wieght mother_Sample 8 |
peripheral blood |
Mom normal |
leukocytes |
mother |
4.7 |
GSM533359 | Peripheral blood leukocyte_Normal wieght mother_Sample 9 |
peripheral blood |
Mom normal |
leukocytes |
mother |
5.2 |
GSM533360 | Peripheral blood leukocyte_Normal wieght mother_Sample 10 |
peripheral blood |
Mom normal |
leukocytes |
mother |
5.4 |
GSM533361 | Peripheral blood leukocyte_Normal wieght mother_Sample 11 |
peripheral blood |
Mom normal |
leukocytes |
mother |
7.5 |
GSM533362 | Peripheral blood leukocyte_Obese mother_Sample 1 |
peripheral blood |
Mom obese |
leukocytes |
mother |
9 |
GSM533363 | Peripheral blood leukocyte_Obese mother_Sample 2 |
peripheral blood |
Mom obese |
leukocytes |
mother |
7.6 |
GSM533364 | Peripheral blood leukocyte_Obese mother_Sample 3 |
peripheral blood |
Mom obese |
leukocytes |
mother |
4.9 |
GSM533365 | Peripheral blood leukocyte_Obese mother_Sample 4 |
peripheral blood |
Mom obese |
leukocytes |
mother |
7.7 |
GSM533366 | Peripheral blood leukocyte_Obese mother_Sample 5 |
peripheral blood |
Mom obese |
leukocytes |
mother |
7.8 |
GSM533367 | Peripheral blood leukocyte_Obese mother_Sample 6 |
peripheral blood |
Mom obese |
leukocytes |
mother |
8.5 |
Name | ||
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